com.bitplane.xt.util

Class ImarisLoaderRemover<A>

java.lang.Object

com.bitplane.xt.util.ImarisLoader<A>

com.bitplane.xt.util.ImarisLoaderRemover<A>

Type Parameters:

A - access type

All Implemented Interfaces:

CacheLoader<Long,Cell<A>>, CacheRemover<Long,Cell<A>,A>, Invalidate<Long>

Direct Known Subclasses:

ImarisDirtyLoaderRemover

public class ImarisLoaderRemover<A>
extends ImarisLoader<A>

Basic CacheLoader/CacheRemover for writing/reading cells to an Imaris IDataset.

Blocks which are not in the cache (yet) are obtained from a backing CacheLoader. Typically the backing loader will just create empty cells.

A ImarisLoaderRemover should be connected to a in-memory cache through IoSync if the cache will be used concurrently by multiple threads!

Author:

Tobias Pietzsch

Field Summary

Fields inherited from class com.bitplane.xt.util.ImarisLoader

grid, n

Fields inherited from interface net.imglib2.cache.Invalidate

defaultParallelismThreshold

Constructor Summary

Constructors

Modifier	Constructor and Description
	ImarisLoaderRemover(Imaris.IDataSetPrx dataset, int[] mapDimensions, CellGrid grid, CacheLoader<Long,Cell<A>> backingLoader, boolean persistOnLoad) TODO
protected	ImarisLoaderRemover(Imaris.IDataSetPrx dataset, int[] mapDimensions, CellGrid grid, CacheLoader<Long,Cell<A>> backingLoader, boolean persistOnLoad, boolean withDirtyFlag)

Method Summary

Modifier and Type	Method and Description
Cell<A>	get(Long key)
void	onRemoval(Long key, A valueData)
CompletableFuture<Void>	persist(Long key, A valueData)

Methods inherited from class com.bitplane.xt.util.ImarisLoader

extract, reconstruct

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.cache.CacheRemover

invalidate, invalidateAll, invalidateIf

Methods inherited from interface net.imglib2.cache.Invalidate

invalidateAll, invalidateIf

Constructor Detail

ImarisLoaderRemover

public ImarisLoaderRemover(Imaris.IDataSetPrx dataset,
                           int[] mapDimensions,
                           CellGrid grid,
                           CacheLoader<Long,Cell<A>> backingLoader,
                           boolean persistOnLoad)
                    throws Imaris.Error

TODO

Parameters:

dataset -

mapDimensions - maps Imaris dimension indices to imglib2 dimension indices. If i is dimension index from Imaris (0..4 means X,Y,Z,C,T) then mapDimensions[i] is the corresponding dimension in Img. For Img dimensions with size=1 are skipped. E.g., for a X,Y,C image mapDimensions = {0,1,-1,2,-1}.

grid -

backingLoader -

persistOnLoad -

Throws:

Imaris.Error

ImarisLoaderRemover

protected ImarisLoaderRemover(Imaris.IDataSetPrx dataset,
                              int[] mapDimensions,
                              CellGrid grid,
                              CacheLoader<Long,Cell<A>> backingLoader,
                              boolean persistOnLoad,
                              boolean withDirtyFlag)
                       throws Imaris.Error

Throws:

Imaris.Error

Method Detail

get

public Cell<A> get(Long key)
            throws Exception

Specified by:

get in interface CacheLoader<Long,Cell<A>>

Overrides:

get in class ImarisLoader<A>

Throws:

Exception

onRemoval

public void onRemoval(Long key,
                      A valueData)

Specified by:

onRemoval in interface CacheRemover<Long,Cell<A>,A>

Overrides:

onRemoval in class ImarisLoader<A>

persist

public CompletableFuture<Void> persist(Long key,
                                       A valueData)

Specified by:

persist in interface CacheRemover<Long,Cell<A>,A>

Overrides:

persist in class ImarisLoader<A>