com.bitplane.xt.util

Class ImarisLoader<A>

java.lang.Object

com.bitplane.xt.util.ImarisLoader<A>

Type Parameters:

A - access type

All Implemented Interfaces:

CacheLoader<Long,Cell<A>>, CacheRemover<Long,Cell<A>,A>, Invalidate<Long>

Direct Known Subclasses:

ImarisLoaderRemover

public class ImarisLoader<A>
extends Object
implements CacheRemover<Long,Cell<A>,A>, CacheLoader<Long,Cell<A>>

A CacheLoader/CacheRemover for reading cells from an Imaris IDataset.

This implementation is intended for read-only images, so the CacheRemover interface is implemented to do nothing.

Author:

Tobias Pietzsch

Field Summary

Fields

Modifier and Type	Field and Description
protected CellGrid	grid
protected int	n

Fields inherited from interface net.imglib2.cache.Invalidate

defaultParallelismThreshold

Constructor Summary

Constructors

Modifier	Constructor and Description
	ImarisLoader(Imaris.IDataSetPrx dataset, int[] mapDimensions, CellGrid grid, int level) TODO
protected	ImarisLoader(Imaris.IDataSetPrx dataset, int[] mapDimensions, CellGrid grid, int level, boolean withDirtyFlag)

Method Summary

Modifier and Type	Method and Description
A	extract(Cell<A> value)
Cell<A>	get(Long key)
void	onRemoval(Long key, A valueData)
CompletableFuture<Void>	persist(Long key, A valueData)
Cell<A>	reconstruct(Long key, A valueData)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.cache.CacheRemover

invalidate, invalidateAll, invalidateIf

Methods inherited from interface net.imglib2.cache.Invalidate

invalidateAll, invalidateIf

Field Detail

grid

protected final CellGrid grid

n

protected final int n

Constructor Detail

ImarisLoader

public ImarisLoader(Imaris.IDataSetPrx dataset,
                    int[] mapDimensions,
                    CellGrid grid,
                    int level)
             throws Imaris.Error

TODO

Parameters:

dataset -

mapDimensions - maps Imaris dimension indices to imglib2 dimension indices. If i is dimension index from Imaris (0..4 means X,Y,Z,C,T) then mapDimensions[i] is the corresponding dimension in Img. For Img dimensions with size=1 are skipped. E.g., for a X,Y,C image mapDimensions = {0,1,-1,2,-1}.

grid -

level -

Throws:

Imaris.Error

ImarisLoader

protected ImarisLoader(Imaris.IDataSetPrx dataset,
                       int[] mapDimensions,
                       CellGrid grid,
                       int level,
                       boolean withDirtyFlag)
                throws Imaris.Error

Throws:

Imaris.Error

Method Detail

get

public Cell<A> get(Long key)
            throws Exception

Specified by:

get in interface CacheLoader<Long,Cell<A>>

Throws:

Exception

extract

public A extract(Cell<A> value)

Specified by:

extract in interface CacheRemover<Long,Cell<A>,A>

reconstruct

public Cell<A> reconstruct(Long key,
                           A valueData)

Specified by:

reconstruct in interface CacheRemover<Long,Cell<A>,A>

onRemoval

public void onRemoval(Long key,
                      A valueData)

Specified by:

onRemoval in interface CacheRemover<Long,Cell<A>,A>

persist

public CompletableFuture<Void> persist(Long key,
                                       A valueData)

Specified by:

persist in interface CacheRemover<Long,Cell<A>,A>