com.bitplane.xt.util

Interface PixelSource<A>

Type Parameters:

A - TODO byte[] VolatileByteArray DirtyVolatileByteArray short[] VolatileShortArray DirtyVolatileShortArray float[] VolatileFloatArray DirtyVolatileFloatArray

Functional Interface:

This is a functional interface and can therefore be used as the assignment target for a lambda expression or method reference.

@FunctionalInterface
public interface PixelSource<A>

Reading Imaris blocks as primitive arrays

Author:

Tobias Pietzsch

Method Summary

Modifier and Type	Method and Description
A	get(int level, long[] min, int[] size) Get sub-volume as flattened array.
static PixelSource<?>	primitiveArraySource(Imaris.IDataSetPrx dataset, Imaris.tType datasetType, int[] mapDimensions) TODO
static <A> PixelSource<A>	volatileArraySource(Imaris.IDataSetPrx dataset, Imaris.tType datasetType, int[] mapDimensions, boolean withDirtyFlag) TODO

Method Detail

get

A get(int level,
      long[] min,
      int[] size)
throws Imaris.Error

Get sub-volume as flattened array.

Parameters:

level - resolution level (0 is full resolution).

min - minimum of interval in Img space. Will be augmented to 5D if necessary.

size - size of interval in Img space. Will be augmented to 5D if necessary.

Returns:

the flattened data array.

Throws:

Imaris.Error

primitiveArraySource

static PixelSource<?> primitiveArraySource(Imaris.IDataSetPrx dataset,
                                           Imaris.tType datasetType,
                                           int[] mapDimensions)

TODO

Parameters:

dataset -

datasetType -

mapDimensions - maps Imaris dimension indices to imglib2 dimension indices. If i is dimension index from Imaris (0..4 means X,Y,Z,C,T) then mapDimensions[i] is the corresponding dimension in Img. For Img dimensions with size=1 are skipped. E.g., for a X,Y,C image mapDimensions = {0,1,-1,2,-1}.

Returns:

volatileArraySource

static <A> PixelSource<A> volatileArraySource(Imaris.IDataSetPrx dataset,
                                              Imaris.tType datasetType,
                                              int[] mapDimensions,
                                              boolean withDirtyFlag)

TODO

Type Parameters:

A -

Parameters:

dataset -

datasetType -

mapDimensions - maps Imaris dimension indices to imglib2 dimension indices. If i is dimension index from Imaris (0..4 means X,Y,Z,C,T) then mapDimensions[i] is the corresponding dimension in Img. For Img dimensions with size=1 are skipped. E.g., for a X,Y,C image mapDimensions = {0,1,-1,2,-1}.

withDirtyFlag -

Returns: