com.bitplane.xt.img

Class ImarisCachedCellImgFactory<T extends NativeType<T>>

java.lang.Object

net.imglib2.img.ImgFactory<T>

net.imglib2.img.NativeImgFactory<T>

com.bitplane.xt.img.ImarisCachedCellImgFactory<T>

public class ImarisCachedCellImgFactory<T extends NativeType<T>>
extends NativeImgFactory<T>

Factory for creating ImarisCachedCellImgs. See ImarisCachedCellImgOptions for available configuration options and defaults.

Author:

Tobias Pietzsch

Constructor Summary

Constructors

Constructor and Description
ImarisCachedCellImgFactory(T type, ImarisApplication imaris) Create a new ImarisCachedCellImgFactory with default configuration.
ImarisCachedCellImgFactory(T type, ImarisApplication imaris, ImarisCachedCellImgOptions optional) Create a new ImarisCachedCellImgFactory with the specified configuration.

Method Summary

Modifier and Type	Method and Description
ImarisCachedCellImg<T,?>	create(Dimensions dimensions)
ImarisCachedCellImg<T,?>	create(Dimensions dimensions, CellLoader<T> loader)
ImarisCachedCellImg<T,?>	create(Dimensions dimensions, CellLoader<T> loader, ImarisCachedCellImgOptions additionalOptions)
ImarisCachedCellImg<T,?>	create(Dimensions dimensions, ImarisCachedCellImgOptions additionalOptions)
ImarisCachedCellImg<T,?>	create(Imaris.IDataSetPrx dataset, Dimensions dimensions)
ImarisCachedCellImg<T,?>	create(Imaris.IDataSetPrx dataset, Dimensions dimensions, CellLoader<T> loader)
ImarisCachedCellImg<T,?>	create(Imaris.IDataSetPrx dataset, Dimensions dimensions, CellLoader<T> loader, ImarisCachedCellImgOptions additionalOptions)
ImarisCachedCellImg<T,?>	create(Imaris.IDataSetPrx dataset, Dimensions dimensions, ImarisCachedCellImgOptions additionalOptions)
ImarisCachedCellImg<T,?>	create(Imaris.IDataSetPrx dataset, long... dimensions) Create writable image around existing Imaris dataset.
ImarisCachedCellImg<T,?>	create(Imaris.IDataSetPrx dataset, long[] dimensions, CellLoader<T> loader) Create writable image around existing empty Imaris dataset.
ImarisCachedCellImg<T,?>	create(Imaris.IDataSetPrx dataset, long[] dimensions, CellLoader<T> loader, ImarisCachedCellImgOptions additionalOptions)
ImarisCachedCellImg<T,?>	create(Imaris.IDataSetPrx dataset, long[] dimensions, ImarisCachedCellImgOptions additionalOptions)
ImarisCachedCellImg<T,?>	create(int[] dimensions)
ImarisCachedCellImg<T,?>	create(long... dimensions)
ImarisCachedCellImg<T,?>	create(long[] dimensions, CellLoader<T> loader)
ImarisCachedCellImg<T,?>	create(long[] dimensions, CellLoader<T> loader, ImarisCachedCellImgOptions additionalOptions)
ImarisCachedCellImg<T,?>	create(long[] dimensions, ImarisCachedCellImgOptions additionalOptions)
NativeImg<T,?>	create(long[] dimension, T type) Deprecated.
<A> ImarisCachedCellImg<T,A>	createWithCacheLoader(Dimensions dimensions, CacheLoader<Long,Cell<A>> backingLoader)
<A> ImarisCachedCellImg<T,A>	createWithCacheLoader(Dimensions dimensions, CacheLoader<Long,Cell<A>> backingLoader, ImarisCachedCellImgOptions additionalOptions)
<A> ImarisCachedCellImg<T,A>	createWithCacheLoader(long[] dimensions, CacheLoader<Long,Cell<A>> backingLoader)
<A> ImarisCachedCellImg<T,A>	createWithCacheLoader(long[] dimensions, CacheLoader<Long,Cell<A>> backingLoader, ImarisCachedCellImgOptions additionalOptions)
ImarisApplication	getApplication()
<S> ImgFactory<S>	imgFactory(S type)

Methods inherited from class net.imglib2.img.ImgFactory

cache, create, create, create, create, create, imgFactory, type

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImarisCachedCellImgFactory

public ImarisCachedCellImgFactory(T type,
                                  ImarisApplication imaris)

Create a new ImarisCachedCellImgFactory with default configuration.

ImarisCachedCellImgFactory

public ImarisCachedCellImgFactory(T type,
                                  ImarisApplication imaris,
                                  ImarisCachedCellImgOptions optional)

Create a new ImarisCachedCellImgFactory with the specified configuration.

Parameters:

optional - configuration options.

Method Detail

getApplication

public ImarisApplication getApplication()

create

public ImarisCachedCellImg<T,?> create(long... dimensions)

Overrides:

create in class NativeImgFactory<T extends NativeType<T>>

create

public ImarisCachedCellImg<T,?> create(Dimensions dimensions)

Overrides:

create in class NativeImgFactory<T extends NativeType<T>>

create

public ImarisCachedCellImg<T,?> create(int[] dimensions)

Overrides:

create in class NativeImgFactory<T extends NativeType<T>>

create

public ImarisCachedCellImg<T,?> create(long[] dimensions,
                                       ImarisCachedCellImgOptions additionalOptions)

create

public ImarisCachedCellImg<T,?> create(Dimensions dimensions,
                                       ImarisCachedCellImgOptions additionalOptions)

create

public ImarisCachedCellImg<T,?> create(long[] dimensions,
                                       CellLoader<T> loader)

create

public ImarisCachedCellImg<T,?> create(Dimensions dimensions,
                                       CellLoader<T> loader)

create

public ImarisCachedCellImg<T,?> create(long[] dimensions,
                                       CellLoader<T> loader,
                                       ImarisCachedCellImgOptions additionalOptions)

create

public ImarisCachedCellImg<T,?> create(Dimensions dimensions,
                                       CellLoader<T> loader,
                                       ImarisCachedCellImgOptions additionalOptions)

create

public ImarisCachedCellImg<T,?> create(Imaris.IDataSetPrx dataset,
                                       long[] dimensions,
                                       CellLoader<T> loader)

Create writable image around existing empty Imaris dataset.

dataset dimensions and dimensions must match. (But dimensions is allowed to strip dimensions with extent 1.)

It is assumed that dataset is empty and cells will be populated from the given loader. Existing data in dataset will thus be potentially overwritten!

create

public ImarisCachedCellImg<T,?> create(Imaris.IDataSetPrx dataset,
                                       Dimensions dimensions,
                                       CellLoader<T> loader)

create

public ImarisCachedCellImg<T,?> create(Imaris.IDataSetPrx dataset,
                                       long[] dimensions,
                                       CellLoader<T> loader,
                                       ImarisCachedCellImgOptions additionalOptions)

create

public ImarisCachedCellImg<T,?> create(Imaris.IDataSetPrx dataset,
                                       Dimensions dimensions,
                                       CellLoader<T> loader,
                                       ImarisCachedCellImgOptions additionalOptions)

createWithCacheLoader

public <A> ImarisCachedCellImg<T,A> createWithCacheLoader(long[] dimensions,
                                                          CacheLoader<Long,Cell<A>> backingLoader)

createWithCacheLoader

public <A> ImarisCachedCellImg<T,A> createWithCacheLoader(Dimensions dimensions,
                                                          CacheLoader<Long,Cell<A>> backingLoader)

createWithCacheLoader

public <A> ImarisCachedCellImg<T,A> createWithCacheLoader(long[] dimensions,
                                                          CacheLoader<Long,Cell<A>> backingLoader,
                                                          ImarisCachedCellImgOptions additionalOptions)

createWithCacheLoader

public <A> ImarisCachedCellImg<T,A> createWithCacheLoader(Dimensions dimensions,
                                                          CacheLoader<Long,Cell<A>> backingLoader,
                                                          ImarisCachedCellImgOptions additionalOptions)

create

public ImarisCachedCellImg<T,?> create(Imaris.IDataSetPrx dataset,
                                       long... dimensions)

Create writable image around existing Imaris dataset.

dataset dimensions and dimensions must match. (But dimensions is allowed to strip dimensions with extent 1.)

Note that this creates a writable image, and modifying the image will result in modifying the Imaris dataset! (eventually, when writing back modified data from the cache).

create

public ImarisCachedCellImg<T,?> create(Imaris.IDataSetPrx dataset,
                                       Dimensions dimensions)

See Also:

create(IDataSetPrx, long...)

create

public ImarisCachedCellImg<T,?> create(Imaris.IDataSetPrx dataset,
                                       long[] dimensions,
                                       ImarisCachedCellImgOptions additionalOptions)

See Also:

create(IDataSetPrx, long...)

create

public ImarisCachedCellImg<T,?> create(Imaris.IDataSetPrx dataset,
                                       Dimensions dimensions,
                                       ImarisCachedCellImgOptions additionalOptions)

See Also:

create(IDataSetPrx, long...)

imgFactory

public <S> ImgFactory<S> imgFactory(S type)
                             throws IncompatibleTypeException

Specified by:

imgFactory in class ImgFactory<T extends NativeType<T>>

Throws:

IncompatibleTypeException

create

@Deprecated
public NativeImg<T,?> create(long[] dimension,
                                         T type)

Deprecated.

Specified by:

create in class NativeImgFactory<T extends NativeType<T>>