com.bitplane.xt

Class DefaultImarisApplication

java.lang.Object

org.scijava.AbstractContextual

com.bitplane.xt.DefaultImarisApplication

All Implemented Interfaces:

ImarisApplication, Contextual

public class DefaultImarisApplication
extends AbstractContextual
implements ImarisApplication

Default implementation of ImarisApplication, which wraps IApplicationPrx and represents one particular Imaris instance.

Author:

Tobias Pietzsch

Constructor Summary

Constructors

Constructor and Description
DefaultImarisApplication(Imaris.IApplicationPrx iApplicationPrx, int applicationId)

Method Summary

Modifier and Type	Method and Description
<T extends NativeType<T> & RealType<T>> ImarisDataset<T>	createDataset(T type, DatasetDimensions dims, ImarisDatasetOptions options) TODO
<T extends NativeType<T> & RealType<T>> ImarisDataset<T>	createDataset(T type, int sx, int sy, int sz, int sc, int st, ImarisDatasetOptions options) Create a new ImarisDataset of the specified type with the specified dimensions.
int	getApplicationID() Get the object ID of the underlying IApplication ICE proxy.
Imaris.IApplicationPrx	getIApplicationPrx() Get the underlying IApplication ICE proxy.
ImarisDataset<?>	getImage(int imageIndex, ImarisDatasetOptions options) Get the Imaris image at imageIndex as an ImarisDataset.
int	getNumberOfImages() Get the number of images loaded in the application.
void	setImage(int imageIndex, ImarisDataset<?> dataset) Set an image to the application.

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.bitplane.xt.ImarisApplication

createDataset, createDataset, getDataset, getDataset, getImage, setDataset

Methods inherited from interface org.scijava.Contextual

setContext

Constructor Detail

DefaultImarisApplication

public DefaultImarisApplication(Imaris.IApplicationPrx iApplicationPrx,
                                int applicationId)

Method Detail

getIApplicationPrx

public Imaris.IApplicationPrx getIApplicationPrx()

Description copied from interface: ImarisApplication

Get the underlying IApplication ICE proxy.

Specified by:

getIApplicationPrx in interface ImarisApplication

getApplicationID

public int getApplicationID()

Description copied from interface: ImarisApplication

Get the object ID of the underlying IApplication ICE proxy.

Specified by:

getApplicationID in interface ImarisApplication

getNumberOfImages

public int getNumberOfImages()

Description copied from interface: ImarisApplication

Get the number of images loaded in the application.

Specified by:

getNumberOfImages in interface ImarisApplication

getImage

public ImarisDataset<?> getImage(int imageIndex,
                                 ImarisDatasetOptions options)

Description copied from interface: ImarisApplication

Get the Imaris image at imageIndex as an ImarisDataset.

Specified by:

getImage in interface ImarisApplication

setImage

public void setImage(int imageIndex,
                     ImarisDataset<?> dataset)

Description copied from interface: ImarisApplication

Set an image to the application. Image index is clamped to be at most the current number of images in the application.

Specified by:

setImage in interface ImarisApplication

createDataset

public <T extends NativeType<T> & RealType<T>> ImarisDataset<T> createDataset(T type,
                                                                              int sx,
                                                                              int sy,
                                                                              int sz,
                                                                              int sc,
                                                                              int st,
                                                                              ImarisDatasetOptions options)

Description copied from interface: ImarisApplication

Create a new ImarisDataset of the specified type with the specified dimensions.

Sizes s≤0 indicate missing dimensions. For example, createDataset(new UnsignedByteType(), 300, 200, 0, 0, 0) creates a 2D ImarisDataset with axes [X,Y]. The size along missing dimensions (Z, C, T in this example) is set to s=1 on the Imaris side.

Specified by:

createDataset in interface ImarisApplication

Parameters:

type - imglib2 pixel type. Must be one of UnsignedByteType, UnsignedShortType, or FloatType.

sx - size in X dimension

sy - size in Y dimension

sz - size in Z dimension

sc - size in C (channel) dimension

st - size in T (time) dimension

createDataset

public <T extends NativeType<T> & RealType<T>> ImarisDataset<T> createDataset(T type,
                                                                              DatasetDimensions dims,
                                                                              ImarisDatasetOptions options)

Description copied from interface: ImarisApplication

TODO

Specified by:

createDataset in interface ImarisApplication