com.bitplane.xt

Class DatasetCalibration

java.lang.Object

com.bitplane.xt.DatasetCalibration

public class DatasetCalibration
extends Object

Calibration (voxel size and unit) and min coordinate for an ImarisDataset.

Note, that the min coordinate is in ImgLib2 convention: It refers to the voxel center. This is in contrast to Imaris conventions, where ExtendMinX, ExtendMinY, ExtendMinZ indicate the min corner of the min voxel.

When reading/writing extents from/to a IDataSetPrx, the min is translated appropriately from/to Imaris conventions.

Author:

Tobias Pietzsch

Constructor Summary

Constructors

Constructor and Description
DatasetCalibration(String unit, double voxelSizeX, double voxelSizeY, double voxelSizeZ, double minX, double minY, double minZ)

Method Summary

Modifier and Type	Method and Description
double	min(int d) Get the coordinate (in dimension d) of the min corner of the dataset, where 0 ≤ d < 3.
String	toString()
String	unit() Get units for voxelSize(int)
double	voxelSize(int d) Get size of a voxel in dimension d, where 0 ≤ d < 3.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DatasetCalibration

public DatasetCalibration(String unit,
                          double voxelSizeX,
                          double voxelSizeY,
                          double voxelSizeZ,
                          double minX,
                          double minY,
                          double minZ)

Method Detail

unit

public String unit()

Get units for voxelSize(int)

voxelSize

public double voxelSize(int d)

Get size of a voxel in dimension d, where 0 ≤ d < 3.

min

public double min(int d)

Get the coordinate (in dimension d) of the min corner of the dataset, where 0 ≤ d < 3.

toString

public String toString()

Overrides:

toString in class Object